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Back Up Your PC or Mac to OneDrive: Any Folder, Encrypted

Back up any folder on Windows 10/11 or macOS to OneDrive — with OneDrive's built-in folder backup, or OurClone for encrypted, incremental snapshots and weekly/monthly schedules (Pro).

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Overview

OneDrive is built into Windows 10 and 11 and ships a capable Mac client too, which makes it the obvious cloud backup destination for a lot of people. The built-in tools cover the basics — Desktop, Documents and Pictures — but they cannot back up an external drive or a project folder outside the OneDrive folder, offer no client-side encryption, and give you little control over versions and retention. This guide covers both approaches on Windows and macOS: OneDrive's native folder backup for a quick start, and OurClone for encrypted, incremental snapshots of any folder — personal accounts and OneDrive for Business alike.

Why OneDrive Is a Strong Backup Choice for Windows Users

OneDrive has a unique advantage over other cloud storage services: it's built directly into Windows 10 and 11. That means no third-party app to install, no separate login — just seamless folder sync that stays out of your way.

Watch a snapshot backup run — or keep reading for the step-by-step.

  • 🪟 Built Into Windows 10 & 11 – OneDrive is pre-installed and deeply integrated with File Explorer and the Settings app. No setup required to get started.
  • 🔄 Known Folder Move – Automatically redirects Desktop, Documents, and Pictures to OneDrive, so they're always backed up without changing your workflow.
  • 🕒 Version History – OneDrive keeps previous versions of files for up to 30 days (Microsoft 365 subscribers get longer retention), letting you recover overwritten or deleted files.
  • 🔐 Ransomware Recovery – OneDrive includes Files Restore, which lets you roll back your entire OneDrive to a point in time before an attack.
  • 📱 Cross-Device Access – Access your backed-up files from any device — phone, tablet, or another Windows PC — through the OneDrive app or web browser.
  • 🏢 Business-Grade Features – OneDrive for Business (via Microsoft 365) adds compliance, audit logs, and advanced sharing controls for professional use.

Method 1: Back Up Windows Using OneDrive's Built-In Folder Sync

Windows makes it simple to start syncing key folders to OneDrive. Here's how to enable folder backup using the native integration.

  1. Click the OneDrive cloud icon in the system tray (bottom-right corner of the taskbar). If it's not visible, search for "OneDrive" in the Start menu and open it.
  2. Sign in with your Microsoft account if prompted.
  3. Click the OneDrive icon again, then select Settings (gear icon → Settings).
  4. Go to the Sync and backup tab, then click Manage backup.
  5. Toggle on the folders you want to protect: Desktop, Documents, and Pictures. These will be continuously synced to your OneDrive cloud storage.
  6. Click Start backup. Windows will redirect these folders to OneDrive while keeping them accessible in File Explorer.

Once enabled, any file you save to Desktop or Documents is automatically backed up to OneDrive within minutes. The folders behave exactly as before — the only difference is that they now live in the cloud, too.

Limitation: Built-in OneDrive sync is limited to Desktop, Documents, and Pictures. It cannot back up external drives, custom project folders, or paths outside your user directory. For those use cases, see Method 2.

Method 2: Back Up Any Folder to OneDrive Using OurClone (Windows and Mac)

OurClone is a desktop backup tool that supports any folder path, adds client-side encryption, and offers scheduling and incremental backups. It works alongside OneDrive's native sync — handling the folders and features that the built-in tool can't. The steps are identical on macOS; the only difference is the folder paths you pick (~/Documents, ~/Projects), and the Mac app needs no extra driver.

  • 🔐 Step 1: Connect OneDrive in OurClone – Open OurClone and click Add Storage. Select OneDrive from the provider list. A browser window will open asking you to sign in with your Microsoft account and authorize OurClone. Once approved, OneDrive appears in your connected storage list.
  • Connecting OneDrive in OurClone on Windows
  • 🗄️ Step 2: Create an Encrypted Backup Repository – Go to the Backup section and click Create Repository. Select a folder in OneDrive as the destination (e.g., pc-backups). Set a repository name and a strong encryption password. Keep this password safe — you cannot restore without it.
  • Creating an encrypted OneDrive backup repository in OurClone
  • 📁 Step 3: Choose Folders to Back Up – Click New Backup and select the folders you want to protect. You can add standard paths like C:\Users\YourName\Documents and Desktop, or any external drive path such as D:\Work\Projects. On a Mac, pick ~/Documents, ~/Projects, or an external disk under /Volumes. Click Backup to begin.
  • Selecting Windows folders for OneDrive backup in OurClone
  • 📊 Step 4: Track the Backup Progress – The Task panel shows real-time upload status for each file. OurClone encrypts data in chunks before uploading, so large backups can be paused and resumed without restarting. Only new or changed files are uploaded on subsequent runs.
  • Tracking OneDrive backup progress in OurClone Task panel
  • 🔄 Step 5: Restore Files When Needed – Open the Backup section in OurClone, select your repository, and choose a backup snapshot. Click Restore, enter your encryption password, and select a destination path. OurClone restores files with their original folder structure intact.
  • Restoring Windows files from OneDrive backup in OurClone

OurClone only needs authorization once. Later runs — started by hand or by a saved weekly or monthly schedule (Pro) — reuse it, as long as the computer is on when the job fires.

On a Mac: Backing Up Folders Outside the OneDrive Folder

The OneDrive client for macOS only syncs what lives inside its own folder, and the tempting shortcut -- a symbolic link from ~/OneDrive to a folder such as ~/Projects -- is not a safe one. Microsoft lists symbolic links and junctions among the things OneDrive does not support: the client may ignore the link, upload it as an empty item, or stop syncing that path without a clear warning, so the folder you think is backed up may not be. The same applies to junctions on Windows.

You have three reliable options instead:

  • 📁 Move the folder -- physically relocate it into ~/OneDrive (or the OneDrive folder on Windows) and work from there.
  • 🖥️ Use Known Folder Backup -- Desktop, Documents and Pictures can be redirected through OneDrive's Preferences → Backup on macOS, or Settings → Sync and backup on Windows.
  • 🗄️ Use OurClone -- the Backup workflow above reads any folder directly and stores encrypted snapshots in OneDrive, no links or relocation required.

OneDrive for Business and Microsoft 365 Accounts

Work accounts follow the same OurClone steps, but access depends on your organisation, so confirm these first:

  • 🪪 Use Your Work Account -- Sign in with the organisational Microsoft account when OurClone opens the browser, not a personal one; the two behave differently and store data in different tenants.
  • ✅ Check Admin Consent -- Some tenants require an administrator to approve third-party app access. If the sign-in is blocked, ask IT to grant consent for OurClone.
  • 📁 Back Up What You Would Actually Restore -- Prioritise project folders, Documents and Desktop; skip caches and system paths.
  • 📶 Plan the First Upload -- The initial snapshot is the heaviest; run it on a reliable connection and start with one folder to confirm sign-in, consent and the restore flow.
  • 🔑 Watch for Access Changes -- A password reset or Conditional Access policy update can revoke the token; re-authorise under Add Storage if scheduled runs start failing.

Setting Up Automatic Backup Schedules in OurClone

Manual backups are easy to forget. OurClone lets you save a backup job as a schedule, so your folders stay protected without you starting each run. Scheduling is a Pro feature, and runs happen while the computer is on with OurClone running.

  1. In OurClone, go to the Backup section and open your backup task.
  2. Click Schedule to set up automation.
  3. Choose how often it should run: one-time, weekly, or monthly (scheduling is a Pro feature).
  4. Save the schedule. When it triggers, the backup runs as a normal task and shows up in the Task Center.

Incremental backups mean that only changed files are uploaded each time, keeping scheduled runs fast and using minimal bandwidth.

Tips for a Solid Windows-to-OneDrive Backup Strategy

  • 💾 Use Both Methods Together – Let OneDrive's native sync handle Desktop/Documents for instant access, and use OurClone to back up external drives and project folders with encryption.
  • 🔑 Store Your Encryption Password Securely – Use a password manager to save your OurClone repository password. Without it, encrypted backups cannot be recovered.
  • 🧪 Test Restores Regularly – Pick a small folder and run a full restore test every few months to confirm your backup is actually recoverable.
  • 🔐 Enable Multi-Factor Authentication on Your Microsoft Account – This prevents unauthorized access to your OneDrive storage even if your password is compromised.
  • 📦 Monitor Storage Quota – Check your OneDrive storage usage periodically. If you're approaching the limit, either clean up old backups or upgrade your Microsoft 365 plan.

Frequently Asked Questions

Does Windows 11 automatically back up to OneDrive?

Windows 11 prompts you to enable OneDrive backup for Desktop, Documents, and Pictures during initial setup. You can also enable it anytime in OneDrive Settings → Sync and backup → Manage backup.

How much free OneDrive storage do I get with Windows?

Every Microsoft account includes 5 GB of free OneDrive storage. Microsoft 365 subscribers get 1 TB per person. Additional storage is available via Microsoft 365 plans starting at $1.99/month for 100 GB.

Can I back up external drives to OneDrive on Windows?

Not with OneDrive's built-in sync. OurClone supports any folder path including external USB drives and network drives, and can back them up to OneDrive with full encryption.

How do I restore a OneDrive backup on Windows?

Native OneDrive: access files directly in File Explorer or the OneDrive web interface. OurClone: open the Backup section, select your repository, choose a backup version, and click Restore. Enter your password and select the destination folder.

Is OneDrive backup encrypted?

Microsoft encrypts all OneDrive data in transit and at rest. OurClone adds an extra layer: files are encrypted on your PC before upload using your own password, so Microsoft cannot access the content.

Summary

Backing up a Windows PC or Mac to OneDrive is easy with the built-in folder backup, but OurClone gives you stronger protection: local encryption, incremental snapshots you can roll back to, any folder including external drives, and a saved weekly or monthly schedule with Pro. Set it up once and your data is protected when you need it most.

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